Scientists have prototyped a new method for 'rationally engineering' enzymes to deliver improved performance.
Trinity College DublinJun 20 2024 Scientists have prototyped a new method for "rationally engineering" enzymes to deliver improved performance. They have devised an algorithm, which takes into account an enzyme's evolutionary history, to flag where mutations could be introduced with a high likelihood of delivering functional improvements.
With one of 20 amino acid 'beads' possible at each position, there is enormous sequence diversity possible in nature. Upon formation of their 3D shape, enzymes carry out a specific function such as digesting our dietary proteins, converting chemical energy into force in our muscles, and destroying bacteria or viruses that invade cells.
"At the heart of this new algorithm is a scoring function that exploits thousands of sequences of beta-lactamase from many diverse organisms. Instead of a few random changes, up to 84 mutations over a sequence of 280 were generated to enhance functional performance," said Dr. Amir Khan, Associate Professor in Trinity College Dublin's School of Biochemistry and Immunology, one of the co-authors of the research.
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